TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22832596|gb|AAF48985.2| CG12788 [Drosophila melanogaster]
         (292 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    49   4e-06

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
 Frame = -1

Query: 86      ISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSG----------CIFGQIYMASSLD 135
               I+   + N   +L + DDN YY+SMRYK YQL  +S             + QIY  + L 
Sbjct: 4467686 INDDDNNNDILNLFILDDNMYYKSMRYKFYQLTYNSSNNNNKEQEEDIRYCQIYFPNDLK 4467507

Query: 136     SCLQANSLRSDATRVPVDVVRQMNERLEVPDTSE-AWERNSLTLNGLDMDTTGS 188
                  + N+ R     V  + + +MN+  E P+  +  WE+ +      D +   S
Sbjct: 4467506 KSKELNNKRLIKNNVDDEGIEKMNDLFEQPNLDKNNWEKENTLFFNFDFNFNDS 4467345


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,174,041
Number of Sequences: 6
Number of extensions: 111709
Number of successful extensions: 380
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 34
length of query: 292
length of database: 11,314,357
effective HSP length: 100
effective length of query: 192
effective length of database: 11,313,757
effective search space: 2172241344
effective search space used: 2172241344
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)